V A Lopez Agudelo, F Tran, M Florea, M Wiestler, M Rühlemann, L Moitinho, E Silva, M Groussin, S Waschina, E M Wacker, R Meneses, C Verspecht, I Reniers, D Ekhlas, J Raes, S Huber, U Seidler, K Aden, S W Schreiber, P Rosenstiel
(2026).
P1320 Longitudinal metagenomic profiling reveals early microbial changes during infliximab response in IBD..
Journal of Crohn’s and Colitis.
Silvio Waschina, Julia Pagel, Karsten Seeger, Elisa Pasderski, Malte Rühlemann, Sina Froitzheim, Sven Künzel, Felix Sommer, Sören Franzenburg, Ingmar Fortmann, Fumi Sugihara, Kirstin Faust, Janina Marissen, Martin Demmert, John F. Baines, Wolfgang Göpel, Egbert Herting, Christoph Kaleta, Jan Rupp, Christoph Härtel
(2025).
Bacterial metabolite patterns of infants receiving multi-strain probiotics and risk of late-onset sepsis.
Cell Reports.
Philipp Rausch, Ilka Ratjen, Lukas Tittmann, Janna Enderle, Eike Matthias Wacker, Kathrin Jaeger, Malte Christoph Rühlemann, Katrin Franzpötter, Pierre Ellul, Robert Kruse, Jonas Halfvarson, Dirk Roggenbuck, David Ellinghaus, Gunnar Jacobs, Michael Krawczak, Stefan Schreiber, Corinna Bang, Wolfgang Lieb, Andre Franke
(2025).
First insights into microbial changes within an Inflammatory Bowel Disease Family Cohort study.
Gut Microbes.
Mathilde Poyet*, Malte Rühlemann*, Ana P. Schaan, Yue Ma, Lucas Moitinho-Silva, Eike M. Wacker, Hannah Jebens, Lucas Patel, Le Thanh Tu Nguyen, Alexis Zimmer, Damian Plichta, Daniel McDonald, Christine Stevens, Adwoa Agyei, Mary Y. Afihene, Shadrack O. Asibey, Yaw A. Awuku, Aida S Badiane, Lee S. Ching, Chris Corzett, Awa Deme, Manuel Dominguez-Rodrigo, Amoako Duah, Alain Fezeu, Alain Froment, Sean Gibbons, Catherine Girard, Jeff Hooker, Fatimah Ibrahim, Deborah Iqaluk, Vanessa Juimo, Pinja Kettunen, Sophie Lafosse, Ernest Lango-Yaya, Jenni Lehtimäki, Yvonne A. L. Lim, Audax Mabulla, Varocha Mahachai, Rihlat S. Mohamed, Katya Moniz, Ivan E. Mwikarago, Yvonne A. Nartey, Daouda Ndiaye, Mary Noel, Charles Onyekwere, Tan M. Pin, Amelie Plymoth, Lewis Roberts, Lasse Ruokolainen, John Rusine, Laure Segurel, B. Jesse Shapiro, Shani Sigwazi, Ainara Sistiaga, Kenneth Valles, Tommi Vatanen, Ratha-korn Vilaichone, Philip Rosenstiel, John Baines, Andre Franke, David Ellinghaus, Rob Knight, Mark Daly, Ramnik J. Xavier, Eric J. Alm, Mathieu Groussin
(2025).
Industrialization drives convergent microbial and physiological shifts in the human metaorganism.
openRxiv.
Przemyslaw M. Podgorny, Stefan Weiss, Corinna Bang, Malte Rühlemann, Mats L. Wiese, Henry Völzke, Andre Franke, Sebastian Zeissig, Matthias Sendler, Ali A. Aghdassi, Markus M. Lerch, Frank U. Weiss, Fabian Frost
(2025).
The Fecal Mycobiome in Chronic Pancreatitis Is Characterized by an Increase in Candida species and Nakaseomyces.
Clinical and Translational Gastroenterology.
Marcello Ricardo Paulista Markus, Frank-Ulrich Weiss, Johannes Hertel, Stefan Weiss, Malte Rühlemann, Corinna Bang, Andre Franke, Uwe Völker, Georg Homuth, Thomas Kocher, Henry Völzke, Markus M. Lerch, Till Ittermann, Stephan Burkhard Felix, Ralf Ewert, Martin Bahls, Marcus Dörr, Fabian Frost
(2025).
Lower cardiorespiratory fitness is associated with an altered gut microbiome. The Study of Health in Pomerania (SHIP).
Scientific Reports.
Lara Linnemann, Jennifer Antwi-Ekwuruke, Vinayaga Gnanapragassam, Corinna Bang, Malte Rühlemann, Jürgen Ruland, Wiebke Hartmann, Lennart Heepmann, Sara Dörken, Saleh M. Yunus, Birte Viebrock, Annette Schlosser, Bernd Lepenies, Minka Breloer
(2025).
The C-type lectin receptor MINCLE interferes with eosinophil function and protective intestinal immunity in Strongyloides ratti-infected mice.
Mucosal Immunology.
Malte Ruehlemann, Lénárd L. Szánthó, Silvio Waschina, Lucas Moitinho-Silva, Laura K. Mews, Joan F. Camarena, Hannah Jebens, John Costa, Vanessa Juimo, Alain Fezeu, Adwoa Agyei, Mary Y. Afihene, Shadrack O. Asibey, Yaw A. Awuku, Amoako Duah, Yvonne A. Nartey, Fatimah Ibrahim, Yvonne A. L. Lim, Tan M. Pin, Charles Onyekwere, John Rusine, Ivan E. Mwikarago, John Baines, Andre Franke, Gergely J Szöllősi, Ramnik Xavier, Eric J. Alm, Mathieu Groussin, Mathilde Poyet
(2025).
Convergent genomic responses of human gut bacteria to variations in industrialization.
bioRxiv.
Mats L. Wiese, Fabian Frost, Martin Bahls, Sabrina von Rheinbaben, Malte Rühlemann, Corinna Bang, Andre Franke, Matthias Nauck, Robin Bülow, Uwe Völker, Henry Völzke, Till Ittermann, Markus M. Lerch, Ali A. Aghdassi
(2024).
Dietary Diversity, Rather Than Quality, Parallels a Reduction in Metabolic Syndrome and a Favorable Gut Microbiome: The Dietary Diversity Score.
Journal of the American Nutrition Association.
Fabian Frost, Stefan Weiss, Johannes Hertel, Malte Rühlemann, Corinna Bang, Andre Franke, Matthias Nauck, Marcus Dörr, Henry Völzke, Dirk Roggenbuck, Peter Schierack, Uwe Völker, Georg Homuth, Ali A. Aghdassi, Matthias Sendler, Markus M. Lerch, Frank U. Weiss
(2024).
Fecal glycoprotein 2 is a marker of gut microbiota dysbiosis and systemic inflammation.
Gut Pathogens.
Juliane Wagner, Luisa Haker, Louisa Mewes, Corinna Bang, Malte Rühlemann, Hendrik Naujokat, Johannes Heinrich Spille, Wolfgang Lieb, Andre Franke, Stefan Schreiber, Matthias Laudes, Christof Dörfer, Jörg Wiltfang, Christian Graetz, Dominik Maria Schulte
(2024).
Changes in Periodontal Parameters and Microbiome Composition of Periodontal Pocket in Patients with Chronic Inflammatory Diseases Receiving Targeted Anti-Cytokine Therapy.
Microorganisms.
Avril J. E. von Hoyningen-Huene, Corinna Bang, Philipp Rausch, Malte Rühlemann, Hanna Fokt, Jinru He, Nadin Jensen, Mirjam Knop, Carola Petersen, Lara Schmittmann, Thorsten Zimmer, John F. Baines, Thomas C. G. Bosch, Ute Hentschel, Thorsten B. H. Reusch, Thomas Roeder, Andre Franke, Hinrich Schulenburg, Eva Stukenbrock, Ruth A. Schmitz
(2024).
The archaeome in metaorganism research, with a focus on marine models and their bacteria–archaea interactions.
Frontiers in Microbiology.
M. C. Rühlemann, C. Bang, J. F. Gogarten, B. M. Hermes, M. Groussin, S. Waschina, M. Poyet, M. Ulrich, C. Akoua-Koffi, T. Deschner, J. J. Muyembe-Tamfum, M. M. Robbins, M. Surbeck, R. M. Wittig, K. Zuberbühler, J. F. Baines, F. H. Leendertz, A. Franke
(2024).
Functional host-specific adaptation of the intestinal microbiome in hominids.
Nature Communications.
Allan Stensballe, Tue Bjerg Bennike, Gitte Ravn-Haren, Alicja Mortensen, Christopher Aboo, Lina Almind Knudsen, Malte C. Rühlemann, Svend Birkelund, Corinne Bang, Andre Franke, Ulla Vogel, Axel Kornerup Hansen, Vibeke Andersen
(2023).
Impaired Abcb1a function and red meat in a translational colitis mouse model induces inflammation and alters microbiota composition.
Frontiers in Medicine.
Charlie Hatcher, George Richenberg, Samuel Waterson, Long H. Nguyen, Amit D. Joshi, Robert Carreras-Torres, Victor Moreno, Andrew T. Chan, Marc Gunter, Yi Lin, Conghui Qu, Mingyang Song, Graham Casey, Jane C. Figueiredo, Stephen B. Gruber, Jochen Hampe, Heather Hampel, Mark A. Jenkins, Temitope O. Keku, Ulrike Peters, Catherine M. Tangen, Anna H. Wu, David A. Hughes, Malte C. Rühlemann, Jeroen Raes, Nicholas J. Timpson, Kaitlin H. Wade
(2023).
Application of Mendelian randomization to explore the causal role of the human gut microbiome in colorectal cancer.
Scientific Reports.
Juliane Glaubitz, Anika Wilden, Fabian Frost, Sabine Ameling, Georg Homuth, Hala Mazloum, Malte Christoph Rühlemann, Corinna Bang, Ali A Aghdassi, Christoph Budde, Tilmann Pickartz, Andre Franke, Barbara M Bröker, Uwe Voelker, Julia Mayerle, Markus M Lerch, Frank-Ulrich Weiss, Matthias Sendler
(2023).
Activated regulatory T-cells promote duodenal bacterial translocation into necrotic areas in severe acute pancreatitis.
Gut.
Arunabh Sharma, Olaf Junge, Silke Szymczak, Malte Christoph Rühlemann, Janna Enderle, Stefan Schreiber, Matthias Laudes, Andre Franke, Wolfgang Lieb, Michael Krawczak, Astrid Dempfle
(2023).
Network-based quantitative trait linkage analysis of microbiome composition in inflammatory bowel disease families.
Frontiers in Genetics.
Charlie Hatcher, George Richenberg, Samuel Waterson, Long H. Nguyen, Amit D. Joshi, Robert Carreras-Torres, Victor Moreno, Andrew T. Chan, Marc Gunter, Yi Lin, Conghui Qu, Mingyang Song, Graham Casey, Jane C Figueiredo, Stephen B Gruber, Jochen Hampe, Heather Hampel, Mark A Jenkins, Temitope O Keku, Ulrike Peters, Catherine M Tangen, Anna H Wu, David A Hughes, Malte C Rühlemann, Jeroen Raes, Nicholas J. Timpson, Kaitlin H. Wade
(2022).
Exploring the causal role of the human gut microbiome in colorectal cancer: Application of Mendelian randomization.
openRxiv.
Lucas Moitinho-Silva, Frauke Degenhardt, Elke Rodriguez, Hila Emmert, Simonas Juzenas, Lena Möbus, Florian Uellendahl-Werth, Nicole Sander, Hansjörg Baurecht, Lukas Tittmann, Wolfgang Lieb, Christian Gieger, Annette Peters, David Ellinghaus, Corinna Bang, Andre Franke, Stephan Weidinger, Malte Christoph Rühlemann
(2022).
Host genetic factors related to innate immunity, environmental sensing and cellular functions are associated with human skin microbiota.
Nature Communications.
Frauke Degenhardt, David Ellinghaus, Simonas Juzenas, Jon Lerga-Jaso, Mareike Wendorff, Douglas Maya-Miles, Florian Uellendahl-Werth, Hesham ElAbd, Malte C Rühlemann, Jatin Arora, Onur Özer, Ole Bernt Lenning, Ronny Myhre, May Sissel Vadla, Eike M Wacker, Lars Wienbrandt, Aaron Blandino Ortiz, Adolfo de Salazar, Adolfo Garrido Chercoles, Adriana Palom, Agustín Ruiz, Alba-Estela Garcia-Fernandez, Albert Blanco-Grau, Alberto Mantovani, Alberto Zanella, Aleksander Rygh Holten, Alena Mayer, Alessandra Bandera, Alessandro Cherubini, Alessandro Protti, Alessio Aghemo, Alessio Gerussi, Alfredo Ramirez, Alice Braun, Almut Nebel, Ana Barreira, Ana Lleo, Ana Teles, Anders Benjamin Kildal, Andrea Biondi, Andrea Caballero-Garralda, Andrea Ganna, Andrea Gori, Andreas Glück, Andreas Lind, Anja Tanck, Anke Hinney, Anna Carreras Nolla, Anna Ludovica Fracanzani, Anna Peschuck, Annalisa Cavallero, Anne Ma Dyrhol-Riise, Antonella Ruello, Antonio Julià, Antonio Muscatello, Antonio Pesenti, Antonio Voza, Ariadna Rando-Segura, Aurora Solier, Axel Schmidt, Beatriz Cortes, Beatriz Mateos, Beatriz Nafria-Jimenez, Benedikt Schaefer, Björn Jensen, Carla Bellinghausen, Carlo Maj, Carlos Ferrando, Carmen de la Horra, Carmen Quereda, Carsten Skurk, Charlotte Thibeault, Chiara Scollo, Christian Herr, Christoph D Spinner, Christoph Gassner, Christoph Lange, Cinzia Hu, Cinzia Paccapelo, Clara Lehmann, Claudio Angelini, Claudio Cappadona, Clinton Azuure, Cristiana Bianco, Cristina Cea, Cristina Sancho, Dag Arne Lihaug Hoff, Daniela Galimberti, Daniele Prati, David Haschka, David Jiménez, David Pestaña, David Toapanta, Eduardo Muñiz-Diaz, Elena Azzolini, Elena Sandoval, Eleonora Binatti, Elio Scarpini, Elisa T Helbig, Elisabetta Casalone, Eloisa Urrechaga, Elvezia Maria Paraboschi, Emanuele Pontali, Enric Reverter, Enrique J Calderón, Enrique Navas, Erik Solligård, Ernesto Contro, Eunate Arana-Arri, Fátima Aziz, Federico Garcia, Félix García Sánchez, Ferruccio Ceriotti, Filippo Martinelli-Boneschi, Flora Peyvandi, Florian Kurth, Francesco Blasi, Francesco Malvestiti, Francisco J Medrano, Francisco Mesonero, Francisco Rodriguez-Frias, Frank Hanses, Fredrik Müller, Georg Hemmrich-Stanisak, Giacomo Bellani, Giacomo Grasselli, Gianni Pezzoli, Giorgio Costantino, Giovanni Albano, Giulia Cardamone, Giuseppe Bellelli, Giuseppe Citerio, Giuseppe Foti, Giuseppe Lamorte, Giuseppe Matullo, Guido Baselli, Hayato Kurihara, Holger Neb, Ilaria My, Ingo Kurth, Isabel Hernández, Isabell Pink, Itziar de Rojas, Iván Galván-Femenia, Jan Cato Holter, Jan Egil Afset, Jan Heyckendorf, Jan Kässens, Jan Kristian Damås, Jan Rybniker, Janine Altmüller, Javier Ampuero, Javier Martín, Jeanette Erdmann, Jesus M Banales, Joan Ramon Badia, Joaquin Dopazo, Jochen Schneider, Jonas Bergan, Jordi Barretina, Jörn Walter, Jose Hernández Quero, Josune Goikoetxea, Juan Delgado, Juan M Guerrero, Julia Fazaal, Julia Kraft, Julia Schröder, Kari Risnes, Karina Banasik, Karl Erik Müller, Karoline I Gaede, Koldo Garcia-Etxebarria, Kristian Tonby, Lars Heggelund, Laura Izquierdo-Sanchez, Laura Rachele Bettini, Lauro Sumoy, Leif Erik Sander, Lena J Lippert, Leonardo Terranova, Lindokuhle Nkambule, Lisa Knopp, Lise Tuset Gustad, Lucia Garbarino, Luigi Santoro, Luis Téllez, Luisa Roade, Mahnoosh Ostadreza, Maider Intxausti, Manolis Kogevinas, Mar Riveiro-Barciela, Marc M Berger, Marco Schaefer, Mari E K Niemi, María A Gutiérrez-Stampa, Maria Carrabba, Maria E Figuera Basso, Maria Grazia Valsecchi, María Hernandez-Tejero, Maria J G T Vehreschild, Maria Manunta, Marialbert Acosta-Herrera, Mariella D’Angiò, Marina Baldini, Marina Cazzaniga, Marit M Grimsrud, Markus Cornberg, Markus M Nöthen, Marta Marquié, Massimo Castoldi, Mattia Cordioli, Maurizio Cecconi, Mauro D’Amato, Max Augustin, Melissa Tomasi, Mercè Boada, Michael Dreher, Michael J Seilmaier, Michael Joannidis, Michael Wittig, Michela Mazzocco, Michele Ciccarelli, Miguel Rodríguez-Gandía, Monica Bocciolone, Monica Miozzo, Natale Imaz Ayo, Natalia Blay, Natalia Chueca, Nicola Montano, Nicole Braun, Nicole Ludwig, Nikolaus Marx, Nilda Martínez, Oliver A Cornely, Oliver Witzke, Orazio Palmieri, Paola Faverio, Paoletta Preatoni, Paolo Bonfanti, Paolo Omodei, Paolo Tentorio, Pedro Castro, Pedro M Rodrigues, Pedro Pablo España, Per Hoffmann, Philip Rosenstiel, Philipp Schommers, Phillip Suwalski, Raúl de Pablo, Ricard Ferrer, Robert Bals, Roberta Gualtierotti, Rocío Gallego-Durán, Rosa Nieto, Rossana Carpani, Rubén Morilla, Salvatore Badalamenti, Sammra Haider, Sandra Ciesek, Sandra May, Sara Bombace, Sara Marsal, Sara Pigazzini, Sebastian Klein, Serena Pelusi, Sibylle Wilfling, Silvano Bosari, Sonja Volland, Søren Brunak, Soumya Raychaudhuri, Stefan Schreiber, Stefanie Heilmann-Heimbach, Stefano Aliberti, Stephan Ripke, Susanne Dudman, Tanja Wesse, Tenghao Zheng, Thomas Bahmer, Thomas Eggermann, Thomas Illig, Thorsten Brenner, Tomas Pumarola, Torsten Feldt, Trine Folseraas, Trinidad Gonzalez Cejudo, Ulf Landmesser, Ulrike Protzer, Ute Hehr, Valeria Rimoldi, Valter Monzani, Vegard Skogen, Verena Keitel, Verena Kopfnagel, Vicente Friaza, Victor Andrade, Victor Moreno, Wolfgang Albrecht, Wolfgang Peter, Wolfgang Poller, Xavier Farre, Xiaoli Yi, Xiaomin Wang, Yascha Khodamoradi, Zehra Karadeniz, Anna Latiano, Siegfried Goerg, Petra Bacher, Philipp Koehler, Florian Tran, Heinz Zoller, Eva C Schulte, Bettina Heidecker, Kerstin U Ludwig, Javier Fernández, Manuel Romero-Gómez, Agustín Albillos, Pietro Invernizzi, Maria Buti, Stefano Duga, Luis Bujanda, Johannes R Hov, Tobias L Lenz, Rosanna Asselta, Rafael de Cid, Luca Valenti, Tom H Karlsen, Mario Cáceres, Andre Franke
(2022).
Detailed stratified GWAS analysis for severe COVID-19 in four European populations.
Human Molecular Genetics.
Johannes Hertel, Daniel Fässler, Almut Heinken, Frank Weiß, Malte Rühlemann, Corinna Bang, Andre Franke, Kathrin Budde, Ann-Kristin Henning, Astrid Petersmann, Uwe Völker, Henry Völzke, Ines Thiele, Hans-Jörgen Grabe, Markus Lerch, Matthias Nauck, Nele Friedrich, Fabian Frost
(2022).
NMR Metabolomics Reveal Urine Markers of Microbiome Diversity and Identify Benzoate Metabolism as a Mediator between High Microbial Alpha Diversity and Metabolic Health.
Metabolites.
Arunabh Sharma, Silke Szymczak, Malte Rühlemann, Sandra Freitag-Wolf, Carolin Knecht, Janna Enderle, Stefan Schreiber, Andre Franke, Wolfgang Lieb, Michael Krawczak, Astrid Dempfle
(2022).
Linkage analysis identifies novel genetic modifiers of microbiome traits in families with inflammatory bowel disease.
Gut Microbes.
Nuria Pell, Ester Garcia-Pras, Javier Gallego, Salvador Naranjo-Suarez, Alexandra Balvey, Clara Suñer, Marcos Fernandez-Alfara, Veronica Chanes, Julia Carbo, Marta Ramirez-Pedraza, Oscar Reina, Louise Thingholm, Corinna Bang, Malte Rühlemann, Andre Franke, Robert Schierwagen, Karl P. Rheinwalt, Jonel Trebicka, Raul Mendez, Mercedes Fernandez
(2021).
Targeting the cytoplasmic polyadenylation element-binding protein CPEB4 protects against diet-induced obesity and microbiome dysbiosis.
Molecular Metabolism.
Chloe Mirzayi, Audrey Renson, Cesare Furlanello, Susanna-Assunta Sansone, Fatima Zohra, Shaimaa Elsafoury, Ludwig Geistlinger, Lora J. Kasselman, Kelly Eckenrode, Janneke van de Wijgert, Amy Loughman, Francine Z. Marques, David A. MacIntyre, Manimozhiyan Arumugam, Rimsha Azhar, Francesco Beghini, Kirk Bergstrom, Ami Bhatt, Jordan E. Bisanz, Jonathan Braun, Hector Corrada Bravo, Gregory A. Buck, Frederic Bushman, David Casero, Gerard Clarke, Maria Carmen Collado, Paul D. Cotter, John F. Cryan, Ryan T. Demmer, Suzanne Devkota, Eran Elinav, Juan S. Escobar, Jennifer Fettweis, Robert D. Finn, Anthony A. Fodor, Sofia Forslund, Andre Franke, Cesare Furlanello, Jack Gilbert, Elizabeth Grice, Benjamin Haibe-Kains, Scott Handley, Pamela Herd, Susan Holmes, Jonathan P. Jacobs, Lisa Karstens, Rob Knight, Dan Knights, Omry Koren, Douglas S. Kwon, Morgan Langille, Brianna Lindsay, Dermot McGovern, Alice C. McHardy, Shannon McWeeney, Noel T. Mueller, Luigi Nezi, Matthew Olm, Noah Palm, Edoardo Pasolli, Jeroen Raes, Matthew R. Redinbo, Malte Rühlemann, R. Balfour Sartor, Patrick D. Schloss, Lynn Schriml, Eran Segal, Michelle Shardell, Thomas Sharpton, Ekaterina Smirnova, Harry Sokol, Justin L. Sonnenburg, Sujatha Srinivasan, Louise B. Thingholm, Peter J. Turnbaugh, Vaibhav Upadhyay, Ramona L. Walls, Paul Wilmes, Takuji Yamada, Georg Zeller, Mingyu Zhang, Ni Zhao, Liping Zhao, Wenjun Bao, Aedin Culhane, Viswanath Devanarayan, Joaquin Dopazo, Xiaohui Fan, Matthias Fischer, Wendell Jones, Rebecca Kusko, Christopher E. Mason, Tim R. Mercer, Susanna-Assunta Sansone, Andreas Scherer, Leming Shi, Shraddha Thakkar, Weida Tong, Russ Wolfinger, Christopher Hunter, Nicola Segata, Curtis Huttenhower, Jennifer B. Dowd, Heidi E. Jones, Levi Waldron
(2021).
Reporting guidelines for human microbiome research: the STORMS checklist.
Nature Medicine.
Louise B. Thingholm, Corinna Bang, Malte C. R??hlemann, Annika Starke, Florian Sicks, Verena Kaspari, Anabell Jandowsky, Kai Fr??lich, Gabriele Ismer, Andreas Bernhard, Claudia Bombis, Barbara Struve, Philipp Rausch, Andre Franke
(2021).
Ecology impacts the decrease of Spirochaetes and Prevotella in the fecal gut microbiota of urban humans.
BMC Microbiology.
Lucas Moitinho-Silva, Michelle Wegener, Sandra May, Florian Schrinner, Awais Akhtar, Teide J. Boysen, Eva Schaeffer, Clint Hansen, Timo Schmidt, Malte C. Rühlemann, Matthias Hübenthal, Philipp Rausch, Mustafa T. Kondakci, Walter Maetzler, Stephan Weidinger, Matthias Laudes, Philip Süß, Dominik Schulte, Ralf Junker, Felix Sommer, Burkhard Weisser, Corinna Bang, Andre Franke
(2021).
Short-term physical exercise impacts on the human holobiont obtained by a randomised intervention study.
BMC Microbiology.
Martin Kummen, Louise B. Thingholm, Malte C. Rühlemann, Kristian Holm, Simen H. Hansen, Lucas Moitinho-Silva, Timur Liwinski, Roman Zenouzi, Christopher Storm-Larsen, Øyvind Midttun, Adrian McCann, Per M. Ueland, Marte L. Høivik, Mette Vesterhus, Marius Trøseid, Matthias Laudes, Wolfgang Lieb, Tom H. Karlsen, Corinna Bang, Christoph Schramm, Andre Franke, Johannes R. Hov
(2021).
Altered Gut Microbial Metabolism of Essential Nutrients in Primary Sclerosing Cholangitis.
Gastroenterology.
Jan F. Gogarten, Malte Rühlemann, Elizabeth Archie, Jenny Tung, Chantal Akoua-Koffi, Corinna Bang, Tobias Deschner, Jean-Jacques Muyembe-Tamfun, Martha M. Robbins, Grit Schubert, Martin Surbeck, Roman M. Wittig, Klaus Zuberbühler, John F. Baines, Andre Franke, Fabian H. Leendertz, Sébastien Calvignac-Spencer
(2021).
Primate phageomes are structured by superhost phylogeny and environment.
Proceedings of the National Academy of Sciences.
Fabian Frost, Tim Kacprowski, Malte Rühlemann, Stefan Weiss, Corinna Bang, Andre Franke, Maik Pietzner, Ali A. Aghdassi, Matthias Sendler, Uwe Völker, Henry Völzke, Julia Mayerle, Frank U. Weiss, Georg Homuth, Markus M. Lerch
(2021).
Carrying asymptomatic gallstones is not associated with changes in intestinal microbiota composition and diversity but cholecystectomy with significant dysbiosis.
Scientific Reports.
F. Degenhardt, D. Ellinghaus, S. Juzenas, J. Lerga-Jaso, M. Wendorff, D. Maya-Miles, F. Uellendahl-Werth, H. ElAbd, M.C. Rühlemann, (+318 authors), A. Franke
(2021).
Detailed stratified GWAS analysis for severe COVID-19 in four European populations.
medRxiv.
Malte Christoph Rühlemann, Britt Marie Hermes, Corinna Bang, Shauni Doms, Lucas Moitinho-Silva, Louise Bruun Thingholm, Fabian Frost, Frauke Degenhardt, Michael Wittig, Jan Kässens, Frank Ulrich Weiss, Annette Peters, Klaus Neuhaus, Uwe Völker, Henry Völzke, Georg Homuth, Stefan Weiss, Harald Grallert, Matthias Laudes, Wolfgang Lieb, Dirk Haller, Markus M. Lerch, John F. Baines, Andre Franke
(2021).
Genome-wide association study in 8,956 German individuals identifies influence of ABO histo-blood groups on gut microbiome.
Nature Genetics.
Fabian Frost, Tim Kacprowski, Malte Rühlemann, Maik Pietzner, Corinna Bang, Andre Franke, Matthias Nauck, Uwe Völker, Henry Völzke, Marcus Dörr, Jan Baumbach, Matthias Sendler, Christian Schulz, Julia Mayerle, Frank U Weiss, Georg Homuth, Markus M Lerch
(2020).
Long-term instability of the intestinal microbiome is associated with metabolic liver disease, low microbiota diversity, diabetes mellitus and impaired exocrine pancreatic function.
Gut.
Mie Korslund Wiinblad Crusell, Tue Haldor Hansen, Trine Nielsen, Kristine Højgaard Allin, Malte C. Rühlemann, Peter Damm, Henrik Vestergaard, Christina Rørbye, Niklas Rye Jørgensen, Ole Bjarne Christiansen, Femke-Anouska Heinsen, Andre Franke, Torben Hansen, Jeannet Lauenborg, Oluf Pedersen
(2020).
Comparative Studies of the Gut Microbiota in the Offspring of Mothers With and Without Gestational Diabetes.
Frontiers in Cellular and Infection Microbiology.
David A. Hughes, Rodrigo Bacigalupe, Jun Wang, Malte C. Ruehlemann, Raul Y. Tito, Gwen Falony, Marie Joossens, Sara Vieira-Silva, Liesbet Henckaerts, Leen Rymenans, Chlo?? Verspecht, Susan Ring, Andre Franke, Kaitlin H. Wade, Nicholas J. Timpson, Jeroen Raes
(2020).
Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.
Nature Microbiology.
Timur Liwinski, Christian Casar, Malte C. Ruehlemann, Corinna Bang, Marcial Sebode, Simon Hohenester, Gerald Denk, Wolfgang Lieb, Ansgar W. Lohse, Andre Franke, Christoph Schramm
(2020).
A disease‐specific decline of the relative abundance of Bifidobacterium in patients with autoimmune hepatitis.
Alimentary Pharmacology & Therapeutics.
Epp Kaleviste, Malte Rühlemann, Jaanika Kärner, Liis Haljasmägi, Liina Tserel, Elin Org, Katarina Trebušak Podkrajšek, Tadej Battelino, Corinna Bang, Andre Franke, Pärt Peterson, Kai Kisand
(2020).
IL-22 Paucity in APECED Is Associated With Mucosal and Microbial Alterations in Oral Cavity.
Frontiers in Immunology.
Heike Seybold, Tobias J. Demetrowitsch, M. Amine Hassani, Silke Szymczak, Ekaterina Reim, Janine Haueisen, Luisa Lübbers, Malte Rühlemann, Andre Franke, Karin Schwarz, Eva H. Stukenbrock
(2020).
A fungal pathogen induces systemic susceptibility and systemic shifts in wheat metabolome and microbiome composition.
Nature Communications.
Fabian Frost, Tim Kacprowski, Malte Rühlemann, Corinna Bang, Andre Franke, Kathrin Zimmermann, Matthias Nauck, Uwe Völker, Henry Völzke, Reiner Biffar, Christian Schulz, Julia Mayerle, Frank U. Weiss, Georg Homuth, Markus M. Lerch
(2019).
Helicobacter pylori infection associates with fecal microbiota composition and diversity.
Scientific Reports.
Philipp Rausch*, Malte Rühlemann*, Britt M. Hermes, Shauni Doms, Tal Dagan, Katja Dierking, Hanna Domin, Sebastian Fraune, Jakob von Frieling, Ute Hentschel, Femke-Anouska Heinsen, Marc Höppner, Martin T. Jahn, Cornelia Jaspers, Kohar Annie B. Kissoyan, Daniela Langfeldt, Ateequr Rehman, Thorsten B. H. Reusch, Thomas Roeder, Ruth A. Schmitz, Hinrich Schulenburg, Ryszard Soluch, Felix Sommer, Eva Stukenbrock, Nancy Weiland-Bräuer, Philip Rosenstiel, Andre Franke, Thomas Bosch, John F. Baines
(2019).
Comparative analysis of amplicon and metagenomic sequencing methods reveals key features in the evolution of animal metaorganisms.
Microbiome.
Louise B. Thingholm, Malte C. Rühlemann, Manja Koch, Brie Fuqua, Guido Laucke, Ruwen Boehm, Corinna Bang, Eric A. Franzosa, Matthias Hübenthal, Ali Rahnavard, Fabian Frost, Jason Lloyd-Price, Melanie Schirmer, Aldons J. Lusis, Chris D. Vulpe, Markus M. Lerch, Georg Homuth, Tim Kacprowski, Carsten O. Schmidt, Ute Nöthlings, Tom H. Karlsen, Wolfgang Lieb, Matthias Laudes, Andre Franke, Curtis Huttenhower
(2019).
Obese Individuals with and without Type 2 Diabetes Show Different Gut Microbial Functional Capacity and Composition.
Cell Host & Microbe.
Leif Tueffers, Camilo Barbosa, Ingrid Bobis, Sabine Schubert, Marc Höppner, Malte Rühlemann, Andre Franke, Philip Rosenstiel, Anette Friedrichs, Annegret Krenz-Weinreich, Helmut Fickenscher, Burkhard Bewig, Stefan Schreiber, Hinrich Schulenburg
(2019).
Pseudomonas aeruginosa populations in the cystic fibrosis lung lose susceptibility to newly applied β-lactams within 3 days.
Journal of Antimicrobial Chemotherapy.
Timur Liwinski, Roman Zenouzi, Clara John, Hanno Ehlken, Malte C Rühlemann, Corinna Bang, Stefan Groth, Wolfgang Lieb, Marcus Kantowski, Nils Andersen, Guido Schachschal, Tom H Karlsen, Johannes R Hov, Thomas Rösch, Ansgar W Lohse, Joerg Heeren, Andre Franke, Christoph Schramm
(2019).
Alterations of the bile microbiome in primary sclerosing cholangitis.
Gut.
Daniela Esser, Janina Lange, Georgios Marinos, Michael Sieber, Lena Best, Daniela Prasse, Jay Bathia, Malte C. Rühlemann, Kathrin Boersch, Cornelia Jaspers, Felix Sommer
(2018).
Functions of the Microbiota for the Physiology of Animal Metaorganisms.
Journal of Innate Immunity.
M.K.W. Crusell, T. Hansen, T. Nielsen, K. Allin, M. Ruehlemann, Peter Damm, Henrik Vestergaard, C. Roerbye, N. Joergensen, O.B. Christiansen, F.-A. Heinsen, A. Franke, T. Hansen, J. Lauenborg, O. Pedersen
(2018).
Gestational diabetes is associated with an aberrant gut microbiota during pregnancy and postpartum.
Journal of Reproductive Immunology.
Fabian Frost, Tim Kacprowski, Malte Christoph Rühlemann, Andre Franke, Femke-Anouska Heinsen, Uwe Völker, Henry Völzke, Ali A Aghdassi, Julia Mayerle, Frank U Weiss, Georg Homuth, Markus M Lerch
(2018).
Functional abdominal pain and discomfort (IBS) is not associated with faecal microbiota composition in the general population.
Gut.
Jun Wang, Alexander Kurilshikov, Djawad Radjabzadeh, Williams Turpin, Kenneth Croitoru, Marc Jan Bonder, Matthew A. Jackson, Carolina Medina-Gomez, Fabian Frost, Georg Homuth, Malte Rühlemann, David Hughes, Han-na Kim, Tim D. Spector, Jordana T. Bell, Claire J. Steves, Nicolas Timpson, Andre Franke, Cisca Wijmenga, Katie Meyer, Tim Kacprowski, Lude Franke, Andrew D. Paterson, Jeroen Raes, Robert Kraaij, Alexandra Zhernakova
(2018).
Meta-analysis of human genome-microbiome association studies: the MiBioGen consortium initiative.
Microbiome.
Hansjörg Baurecht*, Malte C. Rühlemann*, Elke Rodríguez, Frederieke Thielking, Inken Harder, Anna-Sophie Erkens, Dora Stölzl, Eva Ellinghaus, Melanie Hotze, Wolfgang Lieb, Sheng Wang, Femke-Anouska Heinsen-Groth, Andre Franke, Stephan Weidinger
(2018).
Epidermal lipid composition, barrier integrity, and eczematous inflammation are associated with skin microbiome configuration.
Journal of Allergy and Clinical Immunology.
Malte C. Ruehlemann, Frauke Degenhardt, Louise B. Thingholm, Jun Wang, Jurgita Skiecevi??ien??, Philipp Rausch, Johannes R. Hov, Wolfgang Lieb, Tom H. Karlsen, Matthias Laudes, John F. Baines, Femke-Anouska Heinsen, Andre Franke
(2017).
Application of the distance-based F test in an mGWAS investigating ?? diversity of intestinal microbiota identifies variants in SLC9A8 (NHE8) and 3 other loci.
Gut Microbes.
Anna Worthmann, Clara John, Malte C Rühlemann, Miriam Baguhl, Femke-Anouska Heinsen, Nicola Schaltenberg, Markus Heine, Christian Schlein, Ioannis Evangelakos, Chieko Mineo, Markus Fischer, Maura Dandri, Claus Kremoser, Ludger Scheja, Andre Franke, Philip W Shaul, Joerg Heeren
(2017).
Cold-induced conversion of cholesterol to bile acids in mice shapes the gut microbiome and promotes adaptive thermogenesis.
Nature Medicine.
D. Steinacher, T. Claudel, J. Grießner, E. Einwallner, M.C. Rühlemann, O. Ronda, F.-A. Heinsen, T. Stojakovic, H. Scharnagl, H.J. Verkade, W.E. Haubensak, M. Trauner
(2017).
NorUDCA improves liver injury and metabolic situation in mouse models of obesity and steatosis.
Journal of Hepatology.
Jun Wang, Louise B Thingholm, Jurgita Skiecevičienė, Philipp Rausch, Martin Kummen, Johannes R Hov, Frauke Degenhardt, Femke-Anouska Heinsen, Malte C Rühlemann, Silke Szymczak, Kristian Holm, Tönu Esko, Jun Sun, Mihaela Pricop-Jeckstadt, Samer Al-Dury, Pavol Bohov, Jörn Bethune, Felix Sommer, David Ellinghaus, Rolf K Berge, Matthias Hübenthal, Manja Koch, Karin Schwarz, Gerald Rimbach, Patricia Hübbe, Wei-Hung Pan, Raheleh Sheibani-Tezerji, Robert Häsler, Philipp Rosenstiel, Mauro D’Amato, Katja Cloppenborg-Schmidt, Sven Künzel, Matthias Laudes, Hanns-Ulrich Marschall, Wolfgang Lieb, Ute Nöthlings, Tom H Karlsen, John F Baines, Andre Franke
(2016).
Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.
Nature Genetics.
Christian Kienbacher, Stefan Traussnigg, Emina Halilbasic, Claudia D. Fuchs, Werner Dolak, Petra Munda, Tatjana Stojakovic, Günter Fauler, Michael Forster, Femke-Anouska Heinsen, Malte C. Rühlemann, Andre Franke, Michael H. Trauner
(2016).
1053 Bloom of Fecal Megamonas After a 4 Week High Oral Fructose Challenge Disturbs Energy and Lipid Metabolism: Linking Diet to Microbiota, Bile Acid and Host Metabolism Alterations.
Gastroenterology.
D Fangmann, FA Heinsen, DM Schulte, MC Rühlemann, K Türk, U Settgast, N Müller, W Lieb, JF Baines, S Schreiber, A Franke, M Laudes
(2016).
Dietary and weight loss effects on human gut microbiome diversity and metabolism.
Diabetologie und Stoffwechsel.
Christian R. Bauer, Carolin Knecht, Christoph Fretter, Benjamin Baum, Sandra Jendrossek, Malte Rühlemann, Femke-Anouska Heinsen, Nadine Umbach, Bodo Grimbacher, Andre Franke, Wolfgang Lieb, Michael Krawczak, Marc-Thorsten Hütt, Ulrich Sax
(2016).
Interdisciplinary approach towards a systems medicine toolbox using the example of inflammatory diseases.
Briefings in Bioinformatics.
Femke-Anouska Heinsen, Daniela Fangmann, Nike Müller, Dominik M. Schulte, Malte C. Rühlemann, Kathrin Türk, Ute Settgast, Wolfgang Lieb, John F. Baines, Stefan Schreiber, Andre Franke, Matthias Laudes
(2016).
Beneficial Effects of a Dietary Weight Loss Intervention on Human Gut Microbiome Diversity and Metabolism Are Not Sustained during Weight Maintenance.
Obesity Facts.